Education
PhD Candidate, University of Minnesota (Expected 2025)
Ph.D. Minors in Computer Science & Neural Engineering
Emphasis areas: Bio-photonics, Systems Neuroscience, Robotics, Miniaturization, Precision Engineering
Dissertation title: Neurotechnologies for mapping large-scale cortex-wide cellular activity mediating spatial cognition in small mammalian models
Committee: Dr. Suhasa Kodandaramaiah (Chair), Dr. Matt Johnson ( Neuromodulation Chair) , Dr. Jeff Tithof, Dr. Junaed Sattar (Computer Science Chair) .
Master's in Mechanical Engineering (2019)
Bachelor's in Mechanical Engineering (2014)
Skills
Programming: Python- OpenCV, Pandas, Numpy, Scipy, Pyplot, Sklearn, Seaborn; C++, Matlab, R
Machine Learning: LDA, SVM, PCA, K-Means, Graphical Network Analysis, Decision Tree
Deep Learning: CNN, Reinforcement Learning, GANs, Autoencoders, VAE, Pytorch
Statistical Analysis: GraphPad PRISM, SPSS, MS Excel.
Design: Solidworks, PTC Creo and Catia.
CAE/CFD Analysis: Ansys-fluent, Star CCM+, COMSOL, INSPIRE, Ocean View.
Optical Systems Design: Ansys Zeemax, OpticStudio for doing optical simulations.
Robotic System Integration: ROS, NI Labview
Mechanical Testing: Zwick Roell and Instron testing equipment.
Product Life Cycle Management: ENOVIA Dassault 3D Experience.
Neural Data Acquisition: 1 photon wide field Epifluorescence microscopy, Neuropixel recordings, Intan RHD 64 channel ECog recording, Inscopix
Bioimage Analysis: ImageJ, CalMan, Volpy, CNMFE
Neurobehavior Assays: Figure 8 maze - Perceptual decision making, spatial working memory, Plus maze- Spontaneous Alternation, Barnze Maze - Spatial search strategy and path planning, Water and Food deprivation, Open field experiment, Line Maze experiment.
Neurobehavior Analysis: DeepLabCut, YOLO key point tracking, Bonsai, MyRio 1900
Animal Experimentation: Mouse Craniotomy, Reto-orbital injection, Habituation, Ketamine anesthesia.
Scientific Illustration: Illustrator, Figma
Documentation: LATEX
Need to connect ?
Feel free to reach out if you are interested in collaborating on neurotechnology development.
Contact
acherkkil@gmail.com
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